PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_F3EAEC435.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 440aa    MW: 47541.6 Da    PI: 7.9393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_F3EAEC435.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32178237160
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            ++DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g H+h+k
  Traes_1AS_F3EAEC435.1 178 VEDGYNWRKYGQKQVKGSENPRSYYKCTYNNCSMKKKVERSLADGRITQIVYKGAHDHPK 237
                            58********************************************************85 PP

2WRKY103.51.2e-32323381159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+H h+
  Traes_1AS_F3EAEC435.1 323 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDNRAVITTYEGKHSHD 381
                            59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28169238IPR003657WRKY domain
PROSITE profilePS5081126.016173238IPR003657WRKY domain
SuperFamilySSF1182901.14E-25176238IPR003657WRKY domain
SMARTSM007741.4E-34178237IPR003657WRKY domain
PfamPF031061.3E-24179236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-36308383IPR003657WRKY domain
SuperFamilySSF1182906.67E-29315383IPR003657WRKY domain
PROSITE profilePS5081137.436318383IPR003657WRKY domain
SMARTSM007747.0E-38323382IPR003657WRKY domain
PfamPF031062.3E-25324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSSSTGSLDH AGFTFTPPPF ITSFTELLSG SGAGDAERSP RGFNRGGRAG APKFKSAQPP  60
SLPISSPFSC FSVPAGLSPA ELLDSPVLLN YSHILASPTT GAIPAQRCDW QASADLNTFQ  120
QDELGLSGFS FHAVKSNATV NAQVNYLPLF KEQQEQQQEE VVQVSNKSSS SSGNNKQVED  180
GYNWRKYGQK QVKGSENPRS YYKCTYNNCS MKKKVERSLA DGRITQIVYK GAHDHPKPLS  240
TRRNSSGCAA VVAEDHTNGS EHSGPTPENS SVTFGDDEAD KPETKRRKEH GDNEGSSGGT  300
GGCGKPVREP RLVVQTLSDI DILDDGFRWR KYGQKVVKGN PNPRSYYKCT TVGCPVRKHV  360
ERASHDNRAV ITTYEGKHSH DVPIGRGRAL PASSSSDSSA VIWPAAAVQA PCTLEMLAGH  420
PGYAAKDEPR DDMFVESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34178383877Probable WRKY transcription factor 4
2lex_A2e-34178383877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683640.0EF368364.1 Triticum aestivum WRKY transcription factor (WRKY53-b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962416.10.0PREDICTED: probable WRKY transcription factor 26
SwissprotQ8S8P51e-94WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLW4ZZ210.0W4ZZ21_WHEAT; Uncharacterized protein
STRINGSi021956m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-90WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]